The deployment was part of efforts to curb vote buying and ensure strict compliance with electoral laws.
The Commission shared photos of the deployment on its Facebook page on Saturday.
The operation was led by the Lagos Zonal Directorate 1 and Chief of Staff to the Executive Chairman, CE Michael Nzekwe, and acting Director, Lagos Directorate 2, ACE I Ahmed Ghali.
The EFCC operatives monitored polling activities in several key areas across the state.